REPTILIAN BRAIN TRANSCRIPTOMES

REPTILIAN BRAIN TRANSCRIPTOMES
WARNING: THERE IS A VERSION 2.0 OF THE REPTILIAN-TRANSCRIPTOMES DATABASE AVAILABLE HERE
Brain Transcriptome Data Download
Nile Crocodile (Crocodylus niloticus)
‣Unassembled reads - FASTA file:
Crocodylus_AllReads.fasta.zip
‣Contigs & remaining unassembled reads - FASTA file:
Crocodylus_contigs_singletons.fas.zip
Corn Snake (Elaphe guttata)
‣Unassembled reads - FASTA file:
Elaphe_AllReads.fasta.zip
‣Contigs & remaining unassembled reads - FASTA file:
Elaphe_contigs_singletons.fas.zip
Bearded Dragon (Pogona vitticeps)
‣Unassembled reads - FASTA file:
Pogona_AllReads.fasta.zip
‣Contigs & remaining unassembled reads - FASTA file:
Pogona_contigs_singletons.fas.zip
Red-eared Turtle (Trachemys scripta)
‣Unassembled reads - FASTA file:
Trachemys_AllReads.fasta.zip
‣Contigs & remaining unassembled reads - FASTA file:
Trachemys_contigs_singletons.fas.zip
Chicken (Gallus gallus)
‣Unassembled reads - FASTA file:
Gallus_AllReads.fasta.zip
‣Contigs & remaining unassembled reads - FASTA file:
Gallus_contigs_singletons.fas.zip
Publication
✓Tzika A.C., Helaers R., Schramm G. & M. C. Milinkovitch
Reptilian-transcriptome v1.0, a glimpse in the brain transcriptome of five divergent Sauropsida lineages and the phylogenetic position of turtles
EvoDevo 2011, 2: 19
Related publications
✓Brykczynska U., Tzika A.C., Rodriguez I. & M. C. Milinkovitch
Contrasted evolution of the vomeronasal receptor repertoires in Mammals and Squamate reptiles
Genome Biology & Evolution 5: 389-401 (2013)
Back to The LANE Web Site
SEARCH THE MYSQL DATABASE V1.0
Search the reptilian brain transcriptomes using a web interface.
Click here for downloading all contigs and unassembled reads of the version 1.0.
DOWNLOAD
LANE runner v1.0
A JAVA application (& user manual) with a user-friendly interface for automated (i) multiple BLASTing and (ii) building of consensus sequences.
PUBLICATIONS
‣Tzika, Helaers, Schramm & Milinkovitch
EvoDevo 2011, 2: 19
Open Access