REPTILIAN BRAIN TRANSCRIPTOMES

 
 



WARNING: THERE IS A VERSION 2.0 OF THE REPTILIAN-TRANSCRIPTOMES DATABASE AVAILABLE HERE



Brain Transcriptome Data Download

Nile Crocodile (Crocodylus niloticus)

  1. Unassembled reads - FASTA file:
    Crocodylus_AllReads.fasta.zip

  2. Contigs & remaining unassembled reads - FASTA file:
    Crocodylus_contigs_singletons.fas.zip


Corn Snake (Elaphe guttata)

  1. Unassembled reads - FASTA file:
    Elaphe_AllReads.fasta.zip

  2. Contigs & remaining unassembled reads - FASTA file:
    Elaphe_contigs_singletons.fas.zip


Bearded Dragon (Pogona vitticeps)

  1. Unassembled reads - FASTA file:
    Pogona_AllReads.fasta.zip

  2. Contigs & remaining unassembled reads - FASTA file:
    Pogona_contigs_singletons.fas.zip


Red-eared Turtle (Trachemys scripta)

  1. Unassembled reads - FASTA file:
    Trachemys_AllReads.fasta.zip

  2. Contigs & remaining unassembled reads - FASTA file:
    Trachemys_contigs_singletons.fas.zip


Chicken (Gallus gallus)

  1. Unassembled reads - FASTA file:
    Gallus_AllReads.fasta.zip

  2. Contigs & remaining unassembled reads - FASTA file:
    Gallus_contigs_singletons.fas.zip



Publication

  1. Tzika A.C., Helaers R., Schramm G. & M. C. Milinkovitch
    Reptilian-transcriptome v1.0, a glimpse in the brain transcriptome of five divergent Sauropsida lineages and the phylogenetic position of turtles
    EvoDevo 2011, 2: 19

  2. BulletOpen Access

Related publications

  1. Brykczynska U., Tzika A.C., Rodriguez I. & M. C. Milinkovitch
    Contrasted evolution of the vomeronasal receptor repertoires in Mammals and Squamate reptiles
    Genome Biology & Evolution 5: 389-401 (2013)

  2. BulletOpen Access

  3. BulletDownload the Supplementary Materials file



Back to The LANE Web Site

Check here other projects and results from the Laboratory of Artificial & Natural Evolution (LANE) at the University of Geneva, Switzerland.

 









SEARCH THE MYSQL DATABASE V1.0

Search the reptilian brain transcriptomes using a web interface.

WARNING: VERSION 2.0 HERE




DOWNLOAD SEQUENCES

Click here for downloading all contigs and unassembled reads of the version 1.0.

WARNING: VERSION 2.0 HERE




DOWNLOAD
LANE runner
v1.0

A JAVA application (& user manual) with a user-friendly interface for automated (i) multiple BLASTing and (ii) building of consensus sequences.


WARNING: VERSION 2.0 HERE


PUBLICATIONS

  1. Tzika, Helaers, Schramm & Milinkovitch
    EvoDevo 2011, 2: 19
    Open Access

WARNING: VERSION 2.0 HERE



VNO REPTILIAN TRANSCRIPTOMES