REPTILIAN BRAIN TRANSCRIPTOMES

Reptilian-Transcriptomes v2.0 - Data download

All files are compressed (zipped) FASTA files

Corn Snake (Pantherophis guttatus)

1. ‣Contigs & singletons - Pantherophis_mix_transcriptome.fa.zip
   

2. ‣Consensus sequences & orphans - Pantherophis_mix_consensus_and_orphans.fa.zip
   

Leopard Gecko (Eublepharis macularius)

1. ‣Contigs & singletons - Eublepharis_mix_transcriptome.fa.zip
   

2. ‣Consensus sequences & orphans - Eublepharis_consensus_and_orphans.fa.zip
   

Ocellated skink (Chalcides ocellatus)

1. ‣Contigs & singletons - Chalcides_transcriptome.fa.zip
   

2. ‣Consensus sequences & orphans - Chalcides_consensus_and_orphans.fa.zip
   

Tuatara (Sphenodon punctatus)

1. ‣Contigs & singletons - Sphenodon_transcriptome.fa.zip
   

2. ‣Consensus sequences & orphans - Sphenodon_consensus_and_orphans.fa.zip
   

Burmese Python (Python molurus bivittatus)

1. ‣Contigs & singletons - Python_transcriptome.fa.zip
   

2. ‣Consensus sequences & orphans - Python_consensus_and_orphans.fa.zip
   

Common Chameleon (Chamaeleo chamaeleon)

1. ‣Contigs & singletons - Chameleon_transcriptome.fa.zip
   

2. ‣Consensus sequences & orphans - Chamaeleo_consensus_and_orphans.fa.zip
   

Western terrestrial garter Snake (Thamnophis elegans)

1. ‣Contigs & singletons - Thamnophis_transcriptome.fa.zip
   

2. ‣Consensus sequences & orphans - Thamnophis_consensus_and_orphans.fa.zip
   

American Alligator (Alligator mississippiensis)

1. ‣Contigs & singletons - Amississippensis_transcriptome.fa.zip
   

2. ‣Consensus sequences & Transcriptome orphans
      - Alligator_transcriptome_consensus_and_orphans.fa.zip
   

3. ‣Consensus sequences Genome - Alligator_genome_consensus.fa.zip
   

Gharial (Gavialis gangeticus)

1. ‣Consensus sequences Genome - Gavialis_genome_consensus.fa.zip
   

Saltwater Crocodyle (Crocodylus porosus)

1. ‣Consensus sequences Genome - Crocodylus_genome_consensus.fa.zip
   

Painted turtle (Chrysemys picta)

1. ‣Consensus sequences Genome - Chrysemys_genome_consensus.fa.zip
   

Publication

1. ✓Tzika A.C., Ullate-Agote A., Grbic D. & M. C. Milinkovitch
   Reptilian Transcriptomes v2.0: An Extensive Resource for Sauropsida Genomics and Transcriptomics
   Genome Biol. Evol.  7: 1827-1841 (2015)
   

2. Open Access
   

3. Download the Supplementary Materials file
   

4. Database website: Reptilian-Transcriptomes v2.0
   

1. ✓Ullate-Agote A., Milinkovitch M.C. & A.C. Tzika
   The genome sequence of the corn snake (Pantherophis guttatus), a valuable resource for EvoDevo studies in squamates
   Int. J. Dev. Biol. 58: 881-888 (2014)
   

2. Open Access
   

3. ✓Tzika A.C., Helaers R., Schramm G. & M. C. Milinkovitch
   Reptilian-transcriptome v1.0, a glimpse in the brain transcriptome of five divergent Sauropsida lineages and the phylogenetic position of turtles
   EvoDevo 2011, 2: 19
   

4. Open Access
   

5. Database website: Reptilian-Transcriptomes v1.0 (brain transcriptomes)
   

6. ✓Brykczynska U., Tzika A.C., Rodriguez I. & M. C. Milinkovitch
   Contrasted evolution of the vomeronasal receptor repertoires in Mammals and Squamate reptiles
   Genome Biology & Evolution 5: 389-401 (2013)
   

7. Open Access
   

8. Download the Supplementary Materials file
   

9. VNO Transcriptome
   

10. ✓Tzika A. C. & M. C. Milinkovitch.
    A Pragmatic Approach for Selecting Evo-Devo Model Species in Amniotes
    Chapter 7 Pages 119-140 in ‘Evolving Pathways; Key Themes in Evolutionary Developmental Biology’ (A. Minelli & G. Fusco, eds.), Cambridge University Press 2008
    

11. e-mail
    

1. ✓Milinkovitch M.C. & A. C. Tzika
   Escaping the Mouse Trap; the Selection of New Evo-Devo Model Species
   Journal of Experimental Zoology (Mol. Dev. Evol.) 308B: 337–346 (2007)
   

2. e-mail
   

3. News Coverage
   

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